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E-GEOD-62926 - Influence of RppH on the small RNA transcriptome of Neisseria gonorrhoeae MS11

Status
Released on 4 November 2014, last updated on 8 November 2014
Organism
Neisseria gonorrhoeae
Samples (2)
Protocols (2)
Description
We assessed the small RNA transcriptome of Neisseria gonorrhoeae strain MS11 in two genetic backgrounds; using wild type cells as well as cells carrying a rppH insertional mutation. It was found that the presence of the RppH enzyme affected both the quantity and length of small RNAs in various chromosomal locations. However, in comparing the two transcriptomes, we found that not all small RNAs were differentially expressed, suggesting that RppH targets only a subset of transcripts. Analysis of the small RNA transcriptome of N. gonorrhoeae in a wild type and ΔrppH mutant background.
Experiment type
RNA-seq of non coding RNA 
Contacts
MINSEQE
Exp. designProtocolsVariablesProcessedSeq. reads
Files
Investigation descriptionE-GEOD-62926.idf.txt
Sample and data relationshipE-GEOD-62926.sdrf.txt
Processed data (1)E-GEOD-62926.processed.1.zip
Links