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E-GEOD-6221 - Characterization of anaerobic catabolism of p-coumarate in Rhodopseudomonas palustris

Status
Released on 7 May 2008, last updated on 27 March 2012
Organism
Rhodopseudomonas palustris
Samples (6)
Array (1)
Protocols (6)
Description
To address the question of how photosynthetic bacterium Rhodopseudomonas palustris metabolize lignin derived compound p-coumarate, transcriptomics and quantitative proteomics were combined to characterize gene expression profiles at both the mRNA level and protein level in Rhodopseudomonas palustris grown with succinate, benzoate, and p-coumarate as the carbon source. Transcriptome profiles among Rhodopseudomonas palustris cells grown with succinate, benzoate, and p-coumarate as the carbon source were compared.
Experiment type
unknown experiment type 
Contacts
Yasuhiro Oda <yasuhiro@u.washington.edu>, Bing Zhang, Caroline S Harwood, Chongle Pan, Dale A Pelletier, Nagiza F Samatova, Patricia K Lankford, Robert L Hettich, Yasuhiro Oda
Citation
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-GEOD-6221.idf.txt
Sample and data relationshipE-GEOD-6221.sdrf.txt
Raw data (1)E-GEOD-6221.raw.1.zip
Processed data (1)E-GEOD-6221.processed.1.zip
Array designA-GEOD-3954.adf.txt
R ExpressionSetE-GEOD-6221.eSet.r
Links