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E-GEOD-60155 - Whole genome microRNA expression profiling during C. elegans dietary restriction

Status
Released on 27 November 2014, last updated on 28 November 2014
Organism
Caenorhabditis elegans
Samples (4)
Protocols (2)
Description
In order to get an insight into the complex interplay of miRNAs in dietary restriction, we profiled the small RNA polulation of wild-type and eat-2(ad1116) worms on Day 1 and Day 8 of adulthood by Next Generation sequencing. We compared the normalized expression of wild-type vs eat-2(ad1116) on either day 1 or day 8 and found that most of the miRNAs were distinctly upregulated in eat-2(ad1116) on day 1. We performed Next Generation sequencing to compare miRNA profiles of wild-type and eat-2(ad1116) at Day 1 and Day 8
Experiment type
RNA-seq of non coding RNA 
Contacts
Arnab Mukhopadhyay <arnab@nii.ac.in>, A Mukhopadhyay, A Pandit, Vaibhav Jain
MINSEQE
Exp. designProtocolsVariablesProcessedSeq. reads
Files
Investigation descriptionE-GEOD-60155.idf.txt
Sample and data relationshipE-GEOD-60155.sdrf.txt
Processed data (1)E-GEOD-60155.processed.1.zip
Links