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E-GEOD-59466 - Anaerobic Degradation of Phenylacetate By the Hyperthermophilic Archaeon, Ferroglobus placidus

Status
Released on 1 October 2014, last updated on 4 October 2014
Organism
Ferroglobus placidus
Samples (5)
Array (1)
Protocols (8)
Description
Comparison of acetate- to phenylacetate-grown F. placidus cells to identify genes that are potentially involved in anaerobic phenylacetate degradation by this unique hypertherophilic archaeon. A four chip study using total RNA recovered from two separate cultures of Ferroglobus placidus DSM 10642 grown with 1 mM phenylacetate (experimental condition) and two separate cultures of Ferroglobus placidus DSM 10642 grown on 10 mM acetate (control condition). Each chip measures the expression level of 2613 genes from Ferroglobus placidus DSM 10642 with nine 45-60-mer probe pairs (PM/MM) per gene, with three-fold technical redundancy.
Experiment type
transcription profiling by array 
Contacts
Dawn E Holmes <dholmes@microbio.umass.edu>, Carla Risso, Dawn Holmes, Derek Lovley, Jessica Smith
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-GEOD-59466.idf.txt
Sample and data relationshipE-GEOD-59466.sdrf.txt
Raw data (1)E-GEOD-59466.raw.1.zip
Processed data (1)E-GEOD-59466.processed.1.zip
Array designA-GEOD-18954.adf.txt
Links