Please note that we have stopped the regular imports of Gene Expression Omnibus (GEO) data into ArrayExpress. This may not be the latest version of this experiment.

E-GEOD-5847 - Transcription profiling of human tumor and stroma from breast catured by LCM of inflammatory and non inflammatory breast cancers

Status
Submitted on 15 September 2006, released on 14 June 2008, last updated on 27 March 2012
Organism
Homo sapiens
Samples (95)
Array (1)
Protocols (4)
Description
Tumor epithelium and surrounding stromal cells were isolated using laser capture microdissection of human breast cancer to examine differences in gene expression based on tissue types from inflammatory and non-inflammatory breast cancer Experiment Overall Design: We applied LCM to obtain samples enriched in tumor epithelium and stroma from 15 IBC and 35 non-IBC cases to study the relative contribution of each component to the IBC phenotype and to patient survival.
Experiment types
transcription profiling by array, unknown experiment type
Contact
Stefan Ambs
Citation
A stromal gene signature associated with inflammatory breast cancer. Brenda J Boersma, Mark Reimers, Ming Yi, Joseph A Ludwig, Brian T Luke, Robert M Stephens, Harry G Yfantis, Dong H Lee, John N Weinstein, Stefan Ambs. Int J Cancer 122(6):1324-32 (2008)
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-GEOD-5847.idf.txt
Sample and data relationshipE-GEOD-5847.sdrf.txt
Raw data (3)E-GEOD-5847.raw.1.zip, E-GEOD-5847.raw.2.zip, E-GEOD-5847.raw.3.zip
Processed data (1)E-GEOD-5847.processed.1.zip
Array designA-AFFY-33.adf.txt
R ExpressionSetE-GEOD-5847.eSet.r
Links