Please note that we have stopped the regular imports of Gene Expression Omnibus (GEO) data into ArrayExpress. This may not be the latest version of this experiment.

E-GEOD-57229 - Whole genome SNP array data from myelodysplastic syndromes (MDS) patients

Status
Released on 22 May 2014, last updated on 3 June 2014
Organism
Homo sapiens
Samples (14)
Array (1)
Protocols (5)
Description
With the whole genome SNP array information obtained from tumor and matched normal control, we could evaluate the acquired copy number variations (CNVs) and uniparental disomies (UPDs) . Seven MDS patients in a whole genome sequencing project were included in this experiment. To detect acquired CNVs and UPDs in MDS patients, we genotyped both CD34+ cell from bone marrow and matched skin tissue.
Experiment types
genotyping by array, comparative genomic hybridization by array 
Contacts
Zhaohui Gu <gzh48@163.com>, Saijuan Chen, Zhu Chen
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-GEOD-57229.idf.txt
Sample and data relationshipE-GEOD-57229.sdrf.txt
Processed data (1)E-GEOD-57229.processed.1.zip
Additional data (1)E-GEOD-57229.additional.1.zip
Array designA-GEOD-18636.adf.txt
Links