E-GEOD-56661 - seq-UP07329_H4K16ac:DAM1687546_N2_Eemb

Status
Released on 10 April 2014, last updated on 3 June 2014
Organism
Caenorhabditis elegans
Samples (4)
Protocols (2)
Description
This submission comes from a modENCODE project of Jason Lieb. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expression, induce repression of the X chromosome, guide mitotic segregation and genome duplication, govern homolog pairing and recombination during meiosis, and organize chromosome positioning within the nucleus. Our 126 strategically selected targets include RNA polymerase II isoforms, dosage-compensation proteins, centromere components, homolog-pairing facilitators, recombination markers, and nuclear-envelope constituents. We will integrate information generated with existing knowledge on the biology of the targets and perform ChIP-seq analysis on mutant and RNAi extracts lacking selected target proteins.For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf EXPERIMENT TYPE: CHIP-seq. BIOLOGICAL SOURCE: Strain: N2; Developmental Stage: Early Embryo; Genotype: wild type; Sex: Hermaphrodite; EXPERIMENTAL FACTORS: Developmental Stage Early Embryo; temp (temperature) 20 degree celsius; Strain N2; Antibody MP07-329-H4K16ac (target is h4K16ac)
Experiment type
ChIP-seq 
Contacts
Andreas Rechtsteiner <geo@ncbi.nlm.nih.gov>, Susan Strome, Thea Egelhofer
MINSEQE
Exp. designProtocolsVariablesProcessedSeq. reads
Files
Investigation descriptionE-GEOD-56661.idf.txt
Sample and data relationshipE-GEOD-56661.sdrf.txt
Processed data (1)E-GEOD-56661.processed.1.zip
Links