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E-GEOD-53927 - Identification of beta-catenin binding regions in SW480 cells

Status
Released on 12 March 2014, last updated on 15 April 2014
Organism
Homo sapiens
Samples (2)
Protocols (4)
Description
Deregulation of canonical Wnt/beta-catenin pathway is one of the earliest events in the pathogenesis of colon cancer. Mutations in APC or CTNNB1 (beta-catenin gene) are highly frequent in colon cancer and cause aberrant stabilization of b-catenin, which activates the transcription of Wnt target genes by binding to chromatin via the TCF/LEF transcription factors. Here we report an integrative analysis of genome-wide chromatin occupancy of b-catenin by chromatin immunoprecipitation coupled with high-throughput sequencing (ChIP-seq) and gene expression profiling by microarray analysis upon RNAi-mediated knockdown of beta-catenin in colon cancer cells (GSE53656). Immunoprecipitated samples from human colon cancer SW480 cells with antibodies against beta-catenin and control IgG respectively were used for ChIP-seq experiments.
Experiment type
ChIP-seq 
Contacts
Kazuhide Watanabe, Xing Dai
MINSEQE
Exp. designProtocolsVariablesProcessedSeq. reads
Files
Investigation descriptionE-GEOD-53927.idf.txt
Sample and data relationshipE-GEOD-53927.sdrf.txt
Additional data (2)E-GEOD-53927.additional.1.zip, E-GEOD-53927.additional.2.zip
Links