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E-GEOD-53323 - Mapping and dynamics of regulatory DNA in A. thaliana accessions

Released on 15 December 2013, last updated on 15 April 2014
Arabidopsis thaliana
Samples (4)
Protocols (3)
We performed DNase-seq on 7-day-old seedlings from four A. thaliana accessions: Bur-0, Tsu-0, Bay-0, Est-1 using INTACT constructs (Deal and Henikoff, Developmental Cell, 2010) driven by the UBQ10 promoter. Chromatin accessibility profiling (Dnase I-seq) of 7-day-old seedlings of A. thaliana accessions: Bur-0, Tsu-0, Bay-0 & Est-1 grown in LD conditions (16hr light 22°C, 8hr dark 20°C).
Experiment type
Agnieszka Dargiel, Alessandra M Sullivan, Alex P Reynolds, Andrej A Arsovski, Audra K Johnson, Christine Queitsch, Eric Haugen, James Urton, Jennifer L Nemhauser, John A Stamatoyannopoulos, Jun Neri, Kerry L Bubb, Molly Weaver, Morgan Diegel, Peter J Sabo, Richard Sandstrom, Robert Thurman, Shane Neph
Exp. designProtocolsVariablesProcessedSeq. reads
Investigation descriptionE-GEOD-53323.idf.txt
Sample and data relationshipE-GEOD-53323.sdrf.txt
Processed data (1)