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E-GEOD-53323 - Mapping and dynamics of regulatory DNA in A. thaliana accessions

Status
Released on 15 December 2013, last updated on 15 April 2014
Organism
Arabidopsis thaliana
Samples (4)
Protocols (3)
Description
We performed DNase-seq on 7-day-old seedlings from four A. thaliana accessions: Bur-0, Tsu-0, Bay-0, Est-1 using INTACT constructs (Deal and Henikoff, Developmental Cell, 2010) driven by the UBQ10 promoter. Chromatin accessibility profiling (Dnase I-seq) of 7-day-old seedlings of A. thaliana accessions: Bur-0, Tsu-0, Bay-0 & Est-1 grown in LD conditions (16hr light 22°C, 8hr dark 20°C).
Experiment type
ChIP-seq 
Contacts
Agnieszka Dargiel, Alessandra M Sullivan, Alex P Reynolds, Andrej A Arsovski, Audra K Johnson, Christine Queitsch, Eric Haugen, James Urton, Jennifer L Nemhauser, John A Stamatoyannopoulos, Jun Neri, Kerry L Bubb, Molly Weaver, Morgan Diegel, Peter J Sabo, Richard Sandstrom, Robert Thurman, Shane Neph
MINSEQE
Exp. designProtocolsVariablesProcessedSeq. reads
Files
Investigation descriptionE-GEOD-53323.idf.txt
Sample and data relationshipE-GEOD-53323.sdrf.txt
Processed data (1)E-GEOD-53323.processed.1.zip
Links