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E-GEOD-52943 - Genome-wide binding of the homeodomain transcription factor Sine oculis (So) in the Drosophila eye imaginal disc

Status
Released on 17 March 2014, last updated on 24 March 2014
Organism
Drosophila melanogaster
Samples (3)
Protocols (3)
Description
We report genome-wide binding of the highly conserved TF Sine oculis (So), which is necessary for Drosophila eye development and has few previously known direct transcriptional targets. Our data identify novel putative targets of So-mediated regulation, including genes involved in multiple aspects of development. 2 biological replicates of ChIP-seq with anti-So antibody on chromatin from D. melanogaster third instar eye-antennal imaginal discs; negative control - same sample and ChIP-seq protocol without anti-So antibody
Experiment type
ChIP-seq 
Contacts
Feng Wang <fengw@bcm.edu>, Barbara Jusiak, Graeme Mardon, Hui Wang, Rui Chen, Su-Jin Kwak, Umesh C Karandikar
Citation
Regulation of Drosophila Eye Development by the Transcription Factor Sine oculis. Jusiak B, Karandikar UC, Kwak SJ, Wang F, Wang H, Chen R, Mardon G. , PMID:24586968
MINSEQE
Exp. designProtocolsVariablesProcessedSeq. reads
Files
Investigation descriptionE-GEOD-52943.idf.txt
Sample and data relationshipE-GEOD-52943.sdrf.txt
Additional data (1)E-GEOD-52943.additional.1.zip
Links