Please note that we have stopped the regular imports of Gene Expression Omnibus (GEO) data into ArrayExpress. This may not be the latest version of this experiment.

E-GEOD-52643 - Fusion discovery in breast cancer cell line

Status
Released on 22 November 2013, last updated on 15 April 2014
Organism
Homo sapiens
Samples (8)
Protocols (4)
Description
SnowShoes-FTD, a fusion transcript discovery tool, was used to identify fusions in breast cancer cell lines using the RNA-Seq data Total RNA extracted from cell lines. The total RNA was used for construction of RNA-Seq library for RNA-Sequencing.
Experiment type
RNA-seq of coding RNA 
Contacts
Yan W. Asmann <asmann.yan@mayo.edu>, Brian M Necela, E A Thompson, Edith A Perez, Gary P Schroth, Yan W Asmann
MINSEQE
Exp. designProtocolsVariablesProcessedSeq. reads
Files
Investigation descriptionE-GEOD-52643.idf.txt
Sample and data relationshipE-GEOD-52643.sdrf.txt
Additional data (1)E-GEOD-52643.additional.1.zip
Links