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E-GEOD-51886 - Deep sequencing of HetR-bound DNA reveals novel HetR targets in Anabaena sp. strain PCC 7120

Status
Released on 31 October 2013, last updated on 3 May 2014
Organism
Nostoc sp. PCC 7120
Samples (2)
Protocols (4)
Description
We employed chromatin pull-down and deep sequencing to globally identify HetR DNA targets in vivo at 6 hours after fixed-nitrogen deprivation. We identified novel DNA binding targets of tagged HetR-6xHis and defined a consensus HetR binding site from these HetR target sequences. Chromatin pull down of hetR mutant strain UHM103 carrying pAM4375, which expresses HetR-6xHis, and a wild-type control. One dataset was collected.
Experiment type
ChIP-seq 
Contacts
MINSEQE
Exp. designProtocolsVariablesProcessedSeq. reads
Files
Investigation descriptionE-GEOD-51886.idf.txt
Sample and data relationshipE-GEOD-51886.sdrf.txt
Processed data (1)E-GEOD-51886.processed.1.zip
Links