E-GEOD-50688 - RNA-seq analysis of recombinant Synechocystis sp. 6803 provides important insights for understanding polyhydroxyalkanoate production in cyanobacteria under photoautotrophic conditions

Status
Released on 1 December 2013, last updated on 3 June 2014
Organism
Synechocystis sp. PCC 6803
Samples (6)
Protocols (2)
Description
The direct photosynthetic production of polyhydroxyalkanoate in cyanobacteria was improved by increasing carbon flux to biosynthetic pathway and introducing enzyme with higher activity. To understand the global transcriptional changes under photoautotrophic PHA biosynthesis conditions, RNA-seq analysis was performed. Transcriptomes of recombinant Synechocystis sp. with different PHA-producing potential (three strains, two biological replicates for each strain) were analyzed.
Experiment type
RNA-seq of coding RNA 
Contacts
Minami Matsui <minami@riken.jp>, Choon P Foong, Kumar Sudesh, Nyok-Sean Lau, Yukio Kurihara
MINSEQE
Exp. designProtocolsVariablesProcessedSeq. reads
Files
Investigation descriptionE-GEOD-50688.idf.txt
Sample and data relationshipE-GEOD-50688.sdrf.txt
Processed data (1)E-GEOD-50688.processed.1.zip
Links