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E-GEOD-50363 - Abd-B-GFP_W3L_ChIP-seq

Status
Released on 28 August 2013, last updated on 3 June 2014
Organism
Drosophila melanogaster
Samples (4)
Protocols (1)
Description
modENCODE_submission_4962 This submission comes from a modENCODE project of Kevin White. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: The White Lab is aiming to map the association of all the Transcription Factors (TF) on the genome of Drosophila melanogaster. One technique that we use for this purpose is chromatin immunoprecipitation coupled with deep sequencing (ChIP-seq) utilizing an Illumina next generation sequencing platform. The data generated by ChIP-seq experiments consist basically of a plot of signal intensity across the genome. The highest signals correspond to positions in the genome occupied by the tested TF. For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf EXPERIMENT TYPE: CHIP-seq. BIOLOGICAL SOURCE: Strain: Abd-B-GFP; Developmental Stage: L3; Genotype: w; PBac{y[+]-attP-3B}VK00037; Sex: Unknown; Transgene: Abd-B genomic coding region with stop codon replaced with GFP; EXPERIMENTAL FACTORS: Developmental Stage L3; Target gene Abd-B; Strain Abd-B-GFP; Antibody GFP ab290 (target is Green Fluorescent Protein)
Experiment type
ChIP-seq 
Contacts
DCC modENCODE <help@modencode.org>, Kevin White, Lijia Ma, Matthew Slattery
MINSEQE
Exp. designProtocolsVariablesProcessedSeq. reads
Files
Investigation descriptionE-GEOD-50363.idf.txt
Sample and data relationshipE-GEOD-50363.sdrf.txt
Additional data (1)E-GEOD-50363.additional.1.zip
Links