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E-GEOD-50340 - TCF_0-8h_embryo_ChIP-seq

Released on 28 August 2013, last updated on 3 June 2014
Drosophila melanogaster
Samples (4)
Protocols (1)
modENCODE_submission_4074 This submission comes from a modENCODE project of Kevin White. For full list of modENCODE projects, see Project Goal: The White Lab is aiming to map the association of all the Transcription Factors (TF) on the genome of Drosophila melanogaster. One technique that we use for this purpose is chromatin immunoprecipitation coupled with deep sequencing (ChIP-seq) utilizing an Illumina next generation sequencing platform. The data generated by ChIP-seq experiments consist basically of a plot of signal intensity across the genome. The highest signals correspond to positions in the genome occupied by the tested TF. For data usage terms and conditions, please refer to and EXPERIMENT TYPE: CHIP-seq. BIOLOGICAL SOURCE: Strain: Y cn bw sp; Developmental Stage: Embryo 0-8; Genotype: y[1] oc[R3.2]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] lab[R4.2] MstProx[1] GstD5[1] Rh6[1]; Sex: Unknown; EXPERIMENTAL FACTORS: Developmental Stage Embryo 0-8; Strain Y cn bw sp; Antibody anti-dTCF (target is pangolin)
Experiment type
DCC modENCODE <>, Kevin White, Lijia Ma, Matthew Slattery
Exp. designProtocolsVariablesProcessedSeq. reads
Investigation descriptionE-GEOD-50340.idf.txt
Sample and data relationshipE-GEOD-50340.sdrf.txt
Additional data (1)