E-GEOD-49830 - Next Generation Metatranscriptome Sequencing of an Anaerobic Hexadecane-Degrading Microbial Consortia
Released on 29 October 2013, last updated on 3 May 2014
mixed culture KAZ_0815
Purpose: Identification of transcriptionally active genes in the unculturable community constituent, Smithella, during hexadecane degradation; Differential gene expression analysis of hexadecane-relevant genes acoss three different conditions; Extension of metatranscriptomic datasets to other community constituents to identify interspecies relationships. mRNA profiles were generated for this community across three different conditions (hexadecane-, butyric acid-, caprylic acid-degrading conditions) using a modified version of Nextera and sequenced using Illumina's Miseq platform.
RNA-seq of coding RNA
Mallory Embree <email@example.com>, Karsten Zengler, Mallory M Embree
Single-cell genome and metatranscriptome sequencing reveal metabolic interactions of an alkane-degrading methanogenic community. Embree M, Nagarajan H, Movahedi N, Chitsaz H, Zengler K. , Europe PMC 24152715