E-GEOD-4953 - Transcription profiling of pancreata, submandibular, and lacrimal glands from NOD-scid and C57Bl/6-scid mice to study the gene expression patterns of nonobese diabetic mice

Status
Released on 29 November 2007, last updated on 27 March 2012
Organism
Mus musculus
Samples (117)
Arrays (3)
Protocols (7)
Description
Prior to the onset of autoimmune destruction, type 1 diabetic patients and an animal model thereof, the nonobese diabetic (NOD) mouse, show morphological and functional abnormalities in target organs, which may act as inciting events for leukocyte infiltration. To better understand these abnormalities, but without the complications associated with inflammatory infiltrates, we examined genes expressed in autoimmune target tissues (pancreas, submandibular glands, and lacrimal glands) of NOD/scid mice and of autoimmune-resistant C57BL6/scid mice. Experiment Overall Design: Pancreata (6 weeks old mice), submandibular (9 and 15 weeks), and lacrimal glands (15 weeks) from individual NOD-scid and B6-scid mice were isolated for RNA extraction and hybridization on Affymetrix microarrays.
Experiment types
transcription profiling by array, co-expression, organism part comparison, strain or line
Contact
Rodolfo Chaparro
Citation
Nonobese diabetic mice express aspects of both type 1 and type 2 diabetes. Rodolfo José Chaparro, Yves Konigshofer, Georg F Beilhack, Judith A Shizuru, Hugh O McDevitt, Yueh-Hsiu Chien.
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-GEOD-4953.idf.txt
Sample and data relationshipE-GEOD-4953.sdrf.txt
Processed data (1)E-GEOD-4953.processed.1.zip
Array designsA-AFFY-6.adf.txt, A-AFFY-7.adf.txt, A-AFFY-8.adf.txt
Links