Please note that we have stopped the regular imports of Gene Expression Omnibus (GEO) data into ArrayExpress. This may not be the latest version of this experiment.
E-GEOD-49299 - CGH analyses for the Chinese indigenous pig breeds and commercial pig breeds [Agilent]
Released on 29 June 2015, last updated on 19 August 2015
Since CNVs play a vital role in genomic studies, it is an imperative need to develop a comprehensive, more accurate and higher resolution porcine CNV map with practical significance in follow-up CNV functional analyses To detect CNV of pigs, we performed high density aCGH data of diverse pig breeds in the framework of the pig draft genome sequence (Sscrofa10.2) 9 Chinese indigenous pig, one Chinese wild boar and 2 commercial pigs were detected using one pig of Duroc as reference. These 12 animals include 1 wild pig, 2 pigs each from Yorkshire and Landrace as the representatives of modern commercial breeds and 9 unrelated individuals selected from 6 Chinese indigenous breeds (2- Tibetan pig, 2- Diannan small-ear pig, 2-Meishan pig, 1- Min pig, 1-Daweizi pig, and 1-Rongchang pig).
comparative genomic hybridization by array
Huimin Kang <firstname.lastname@example.org>, Jianfeng Liu, Jicai Jiang, Jiying Wang
Improved Detection and Characterization of Copy Number Variations Among Diverse Pig Breeds by Array CGH. Wang J, Jiang J, Wang H, Kang H, Zhang Q, Liu JF.