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E-GEOD-49299 - CGH analyses for the Chinese indigenous pig breeds and commercial pig breeds [Agilent]

Status
Released on 29 June 2015, last updated on 19 August 2015
Organism
Sus scrofa
Samples (24)
Array (1)
Protocols (5)
Description
Since CNVs play a vital role in genomic studies, it is an imperative need to develop a comprehensive, more accurate and higher resolution porcine CNV map with practical significance in follow-up CNV functional analyses To detect CNV of pigs, we performed high density aCGH data of diverse pig breeds in the framework of the pig draft genome sequence (Sscrofa10.2) 9 Chinese indigenous pig, one Chinese wild boar and 2 commercial pigs were detected using one pig of Duroc as reference. These 12 animals include 1 wild pig, 2 pigs each from Yorkshire and Landrace as the representatives of modern commercial breeds and 9 unrelated individuals selected from 6 Chinese indigenous breeds (2- Tibetan pig, 2- Diannan small-ear pig, 2-Meishan pig, 1- Min pig, 1-Daweizi pig, and 1-Rongchang pig).
Experiment type
comparative genomic hybridization by array 
Contacts
Huimin Kang <nongdaxiaokang@126.com>, Jianfeng Liu, Jicai Jiang, Jiying Wang
Citation
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-GEOD-49299.idf.txt
Sample and data relationshipE-GEOD-49299.sdrf.txt
Raw data (12)Click to browse raw data
Processed data (1)E-GEOD-49299.processed.1.zip
Array designA-GEOD-17469.adf.txt
Links