E-GEOD-48915 - Expression data from tissues during somatic embryogenesis in Arabidopsis

Status
Released on 17 July 2013, last updated on 3 June 2014
Organism
Arabidopsis thaliana
Samples (16)
Array (1)
Protocols (7)
Description
We collected tissues from bent cotyledon stage zygotic embryos, proliferating tissue at day 7 and day 14 induction of somatic embryogenesis and mature somatic emrbyos in a wild type (Col-0) and vtc2 (SALK_146824) insertion. We used microarrays to identify global patterns of gene activity during somatic embryogenesis in a wild type (Col-0) and vitamin C deficient mutant (vtc2) RNA was extracted and amplified from four stages of somatic embryogenesis (bent cotyledon, day 7 induction, day 14 induction, and mature somatic embryos) in a wild type (Col-0) and vitamin C deficient mutant (vtc2) before being hybridized to the Arabidopsis ATH1 GeneChip in duplicate (two biological replicates).
Experiment type
transcription profiling by array 
Contacts
Mark Findlay Belmonte <geo@ncbi.nlm.nih.gov>, Ainsley Chan, Mark Belmonte, Michael Becker, Samantha Lee, Sherry Mao
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-GEOD-48915.idf.txt
Sample and data relationshipE-GEOD-48915.sdrf.txt
Raw data (1)E-GEOD-48915.raw.1.zip
Processed data (1)E-GEOD-48915.processed.1.zip
Array designA-AFFY-2.adf.txt
Links