E-GEOD-48513 - RLPII_phospho2_ab5095.Clone_8.Solexa

Released on 3 July 2013, last updated on 5 September 2013
Drosophila melanogaster
Samples (4)
Protocols (2)
modENCODE_submission_5576 This submission comes from a modENCODE project of Gary Karpen. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: We aim to determine the locations of 125 chromosomal proteins across the Drosophila melanogaster genome. The proteins under study are involved in basic chromosomal functions such as DNA replication, gene expression, gene silencing, and inheritance. We will perform Chromatin ImmunoPrecipitation (ChIP) using the Illumina NGS platform. We will initially assay localizations using chromatin from three cell lines and two embryonic stages, and will then extend the analysis of a subset of proteins to four additional animal tissues/stages For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf EXPERIMENT TYPE: CHIP-seq. BIOLOGICAL SOURCE: Cell Line: CME-W1-Cl.8+; Tissue: dorsal mesothoracic disc; Developmental Stage: third instar larval stage; Sex: Male; EXPERIMENTAL FACTORS: Cell Line CME-W1-Cl.8+; Antibody RLPII phospho2 ab5095 (target is RNA polymerase II CTD repeat YSPTSPS (phospho S2))
Experiment type
DCC modENCODE <help@modencode.org>, Aki Minoda, Andrey Gortchakov, Art Alekseyenko, Cameron Kennedy, Gary Karpen, Greg Shanower, Michael Tolstorukov, Mitzi Kuroda, Nicole Riddle, Peter Kharchenko, Peter Park, Sarah Elgin, Vincenzo Pirrotta, Yuri Schwartz
Exp. designProtocolsVariablesProcessedSeq. reads
Investigation descriptionE-GEOD-48513.idf.txt
Sample and data relationshipE-GEOD-48513.sdrf.txt
Processed data (1)E-GEOD-48513.processed.1.zip
Additional data (1)E-GEOD-48513.additional.1.zip