E-GEOD-48395 - Rice gene expression using Agilent custom 8X60K Microarray

Status
Released on 18 October 2013, last updated on 3 June 2014
Organism
Oryza sativa
Samples (8)
Array (1)
Protocols (7)
Description
We designed an array based on the release 7 of Michigan State University (MSU) rice genome annotation database (http://rice.plantbiology.msu.edu). The array was used for investigating the expression divergence and regulation between two contrasting rice genotypes under high salinity stress. The expression analysis was carried out using 14-day old whole seedlings from both japonica and indica rice lines. Two samples from NaCl treatment (0h and 8h) for each line were collected for the analysis. Two biological replicates were carried out for both control and NaCl treatments, resulting in a dataset of 8 microarrays.
Experiment type
transcription profiling by array 
Contacts
Shuye Jiang <geo@ncbi.nlm.nih.gov>, A Ma, R Ramamoorthy, S Jiang, S Ramachandran
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-GEOD-48395.idf.txt
Sample and data relationshipE-GEOD-48395.sdrf.txt
Raw data (1)E-GEOD-48395.raw.1.zip
Processed data (1)E-GEOD-48395.processed.1.zip
Array designA-GEOD-17380.adf.txt
Links