Please note that we have stopped the regular imports of Gene Expression Omnibus (GEO) data into ArrayExpress. This may not be the latest version of this experiment.

E-GEOD-48263 - Genome wide mapping of effects of U6atac knockdown on pre-mRNA splicing

Status
Released on 1 August 2013, last updated on 5 September 2013
Organism
Homo sapiens
Samples (2)
Protocols (4)
Description
This project looks into experimentally identifying all minor introns by knocking down the minor spliceosome's catalytic snRNP, U6atac. Knockdown of U6atac by antisense morpholino followed by examining mRNA splicing by RNA-seq
Experiment type
RNA-seq of coding RNA 
Contacts
Citation
Minor introns are embedded molecular switches regulated by highly unstable U6atac snRNA. Younis I, Dittmar K, Wang W, Foley SW, Berg MG, Hu KY, Wei Z, Wan L, Dreyfuss G. , PMID:23908766
MINSEQE
Exp. designProtocolsVariablesProcessedSeq. reads
Files
Investigation descriptionE-GEOD-48263.idf.txt
Sample and data relationshipE-GEOD-48263.sdrf.txt
Processed data (1)E-GEOD-48263.processed.1.zip
Links