E-GEOD-48234 - A global profiling of uncapped mRNAs under cold stress reveals specific decay patterns and endonucleolytic cleavages in Brachypodium

Status
Released on 15 July 2013, last updated on 5 September 2013
Organism
Brachypodium distachyon
Samples (4)
Protocols (4)
Description
PARE (parallel analysis of RNA ends) was performed to study the change of uncapped mRNAs before and after cold treatment in Brachypodium. Different change patterns were identified. We have provided a complete view of uncapped transcriptome under cold stress condition, which will deepen our understanding of gene expression regulation in cold stress response as well as cold stress response mechanism for monocot plants. The uncapped mRNA profiles of 12-day-old Brachypodium seedlings with and without cold treatment (4 °C for 24 h) were generated by deep sequencing using Illumina GAIIx
Experiment type
RNA-seq of non coding RNA 
Contacts
MINSEQE
Exp. designProtocolsVariablesProcessedSeq. reads
Files
Investigation descriptionE-GEOD-48234.idf.txt
Sample and data relationshipE-GEOD-48234.sdrf.txt
Processed data (1)E-GEOD-48234.processed.1.zip
Links