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E-GEOD-47902 - Expression profiles of wildtype and SHOX transgenic embryonic mouse limbs

Status
Released on 13 August 2014, last updated on 15 August 2014
Organism
Mus musculus
Samples (4)
Array (1)
Protocols (7)
Description
Deficiency of the human short stature homeobox-containing gene (SHOX) has been identified in several disorders characterized by reduced height and skeletal anomalies such as Turner, Leri-Weill and Langer syndrome as well as idiopathic short stature. Although highly conserved in vertebrates, rodents lack a SHOX orthologue. Here, we compared gene expression profiles of wildtype and SHOX transgenic mouse limbs using microarray experiments to identify SHOX target genes in the developing limb. Limbs of E12.5 mouse embryos were dissected, fore- and hindlimbs were pooled and genotyped for RNA extraction. RNA from 2 to 4 littermates was pooled per genotype (Wildtype and SHOX transgene) and compared. In total, 2 microarray hybridization experiments were performed using RNA from 2 biological replicate samples for each genotype.
Experiment type
transcription profiling by array 
Contacts
Carsten Sticht <geo@ncbi.nlm.nih.gov>, Katja U Beiser, Norbert Gretz
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-GEOD-47902.idf.txt
Sample and data relationshipE-GEOD-47902.sdrf.txt
Raw data (1)E-GEOD-47902.raw.1.zip
Processed data (1)E-GEOD-47902.processed.1.zip
Array designA-GEOD-14661.adf.txt
Links