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E-GEOD-47120 - Effect of ETV1 knockdown on genome wide AR binding in LNCaP Cells

Status
Released on 13 June 2013, last updated on 4 July 2013
Organism
Homo sapiens
Samples (5)
Protocols (3)
Description
Translocation of ETS transcription factors including ERG and ETV1 occur in half of all prostate cancers. LNCaP cells harbor an ETV1 translocation. We performed ChIP-Seq analysis to determine the role of ETV1 on AR binding. The localization of enhancers were determined by H3K4me1 ChIP-Seq. To determine ETV1 and H3K4me1 localization, logarithmically growing cells
Experiment type
ChIP-seq 
Contacts
Yu Chen <cheny1@mskcc.org>, Charles L Sawyers
MINSEQE
Exp. designProtocolsVariablesProcessedSeq. reads
Files
Investigation descriptionE-GEOD-47120.idf.txt
Sample and data relationshipE-GEOD-47120.sdrf.txt
Processed data (1)E-GEOD-47120.processed.1.zip
Links