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E-GEOD-46929 - Wnt inhibitory factor 1 (WIF1) is not silenced by DNA methylation in osteosarcoma, and instead, represents a marker of osteoblastic differentiation stage (gene expression)

Status
Released on 1 July 2015, last updated on 19 August 2015
Organism
Mus musculus
Samples (6)
Array (1)
Protocols (7)
Description
The aim was to identify pathways and genes that are transcriptionally deregulated in osteosarcoma due to changes in CpG island DNA methylation. In order to identify candidates, we compared low passage cell cultures derived from a mouse model of osteosarcoma to mature osteoblasts derived by in vitro differentiation of the mouse bone marrow stromal cell line, Kusa4b10. Under cell culture osteoblastic differentiating conditions, Kusa4b10 cells acquire a mature osteoblastic phenotype (21 days). A potential role for DNA methylation in directing gene expression changes was established by integrating gene expression data with genome wide DNA methylation maps generated by methyl-DNA binding domain capture and NimbleGen promoter arrays (MBDCap-Chip). 3 cell lines derived from primary tumors from p53 Rb Osterix-Cre:lox OS model, 3 Osteoblasts (differentiated Kusa4b10 cells (21 days under osteoblastic differentiation conditions)
Experiment type
transcription profiling by array 
Contacts
Alistair Morgan Chalk <alistair.chalk@gmail.com>, A C Green, A Gupte, A M Chalk, C R Walkley, E K Baker, L E Purton, M D Robinson, S Bhattacharya, S R Taylor, T J Martin
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-GEOD-46929.idf.txt
Sample and data relationshipE-GEOD-46929.sdrf.txt
Raw data (1)E-GEOD-46929.raw.1.zip
Processed data (1)E-GEOD-46929.processed.1.zip
Array designA-AFFY-130.adf.txt
Links