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E-GEOD-46621 - RNA-seq of Arabidopsis seedlings with or without light pulses treatment in the middle of day or night against untreated controls to study how the light pulses control the phase of the circadian clock

Status
Released on 2 August 2013, last updated on 5 May 2015
Organism
Arabidopsis thaliana
Samples (12)
Array (1)
Protocols (7)
Description
Light pulses at the end of the day or night be able to control the phase of the circadian clock. Pulses in the middle of the night has not effect on the circadian oscilations. To understand how the circadian clock gate the light signal in the middle of the night we used microarrays to characterize the light effect in the whole expression profile. Plants of Arabidopsis thalina (Columbia ecotype) were grown in 12/12 light/dark cicles for 15 days and then were tranfer to continuous dark . Plants were slplit in two groups. First group recieved 1hr light pulse in the middle of the night (Night treatment), second group recieve 1hr light pulse in the middle of the subjective day (Day Treatment). Samples of both groups were collected without light pulse named as a control.
Experiment type
transcription profiling by array 
Contacts
Marcelo Yanovsky, Matias Rugnone
Citation
LNK genes integrate light and clock signaling networks at the core of the Arabidopsis oscillator. Rugnone ML, Faigón Soverna A, Sanchez SE, Schlaen RG, Hernando CE, Seymour DK, Mancini E, Chernomoretz A, Weigel D, Más P, Yanovsky MJ. , PMID:23818596
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-GEOD-46621.idf.txt
Sample and data relationshipE-GEOD-46621.sdrf.txt
Raw data (1)E-GEOD-46621.raw.1.zip
Processed data (1)E-GEOD-46621.processed.1.zip
Array designA-AFFY-2.adf.txt
Links