E-GEOD-46180 - Transcriptome profiling of potato hypersensistive response to PVY infection

Status
Released on 1 October 2013, last updated on 3 June 2014
Organism
Solanum tuberosum
Samples (48)
Array (1)
Protocols (7)
Description
Our aim was to investigate involvement of salicylic acid signalling in Ny-mediated hypersensistive response by comparison of transcriptomic response to the Potato Virus Y in potato plants of genotypes Rywal, bearing Ny-1 allele and NahG-Rywal, unable to accumulate salicylic acid in three time points (1, 3 and 6 days post inoculation) after viral inoculation. Inoculated leaves of mock- and virus- inoculated plants (four each) were sampled 1, 3 and 6 days after inoculation (dpi). POCI microarrays were used (one-color design)
Experiment type
transcription profiling by array 
Contacts
Kamil Witek, Marko Petek, Spela Baebler
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-GEOD-46180.idf.txt
Sample and data relationshipE-GEOD-46180.sdrf.txt
Raw data (1)E-GEOD-46180.raw.1.zip
Processed data (1)E-GEOD-46180.processed.1.zip
Additional data (1)E-GEOD-46180.additional.1.zip
Array designA-GEOD-14365.adf.txt
Links