E-GEOD-4616 - Transcription profiling of mouse cardiac muscle from mice with streptozotocin induced diabetes vs controls comparing sedentary vs. training growth conditions for different time periods

Submitted on 5 April 2006, released on 23 November 2007, last updated on 27 March 2012
Mus musculus
Samples (12)
Array (1)
Protocols (3)
We investigated the effects of diabetes, physical training, and their combination on the gene expression of cardiac muscle. Mice were divided to control (C), training (T), streptozotocin-induced diabetic (D), and diabetic training (DT) groups. Training groups performed 1, 3, or 5 weeks of endurance training on a motor-driven treadmill. Muscle samples from T and DT groups together with respective controls were collected 24 hours after the last training session. Gene expression of cardiac muscles were analyzed using Affymetrix Gene chip MG U74Av2 (Affymetrix , Inc., Santa Clara, CA). Experiment was performed on 10 to 15 weeks old male NMRI mice (Harlan, Holland) housed in standard conditions (temperature 22°C, humidity 60 ± 10 %, artificial light from 8.00 am to 8.00 pm, normally 5 animals per cage). Animals had free access to tap water and food pellets (R36, Labfor, Stockholm, Sweden). Animals were randomly divided into healthy and diabetic groups. The diabetic group received a single peritoneal injection of streptozotocin (STZ, Sigma-Aldrich, France, 180 mg/kg) dissolved in sodium citrate buffer solution (0.1 mol/l, pH 4.5) to induce experimental diabetes similar to type 1. The other group received injection of an equal volume of buffer. Diabetes was confirmed 72 hours after the injection by urine glucose testing (Glukotest(r), Roche, Germany), and mice were characterized diabetic when urine glucose values were greater than 200 mg/dl. Diabetic and healthy animals were randomly assigned into 12 groups (n = 5 per group), which were sedentary or trained for one, three or five weeks. Training groups performed 1 hour per day of treadmill running at 21 m/min and 2.5° incline. After one day of familiarization on a rodent treadmill, the mice ran as described above 5 days per week. Mice were sacrificed 24 hours after the last training bout (respective sedentary controls at the same time) by cervical dislocation followed by decapitation. Cardiac muscle was removed, weighed, snap frozen in liquid nitrogen and stored at -80°C for further analysis.
Experiment types
transcription profiling by array, co-expression, disease state, time series
Effects of streptozotocin-induced diabetes and physical training on gene expression of titin-based stretch-sensing complexes in mouse striated muscle. T Maarit Lehti, Mika Silvennoinen, Riikka Kivelä, Heikki Kainulainen, Jyrki Komulainen. Am J Physiol Endocrinol Metab 292(2):E533-42 (2007)
Investigation descriptionE-GEOD-4616.idf.txt
Sample and data relationshipE-GEOD-4616.sdrf.txt
Raw data (1)E-GEOD-4616.raw.1.zip
Processed data (1)E-GEOD-4616.processed.1.zip
Array designA-AFFY-6.adf.txt
R ExpressionSetE-GEOD-4616.eSet.r