E-GEOD-46096 - Gene Expression Changes in the Development of the Soybean Seed-Early Maturation Stage

Released on 17 April 2013, last updated on 12 November 2015
Glycine max
Samples (51)
Protocols (3)
We investigated soybean seed development because (1) soybean seeds are a major source of food and fuel, (2) soybean seeds have been an excellent system for studying the basic processes controlling seed development for over three decades, and (3) new soybean genomic resources, including the sequence of the soybean genome and the gene expression profiles for all seed compartments, tissues, and cell types, can be used to gain new insights into the regulatory processes required for seed differentiation. We sequenced messenger RNA populations of specific soybean seed compartments, which will provide new insights into gene expression that are important for “making a soybean seed.” Seventeen compartments of the Early Maturation stage of the soybean seeds were analyzed. Three to four biological replicates were collected for each compartment.
Experiment type
RNA-seq of coding RNA 
Alexander Olson, Erik Garber, John J Harada, Julie Pelletier, Lourenz Balayan, Meryl Hashimoto, Rie Uzawa, Robert B Goldberg, Russell W Baden, Ryan Kirkbride, Shu-Heng Chang, Ssu-Wei Hsu, Tina Y Wang, Uranus Chau
Down-Regulating the Expression of 53 Soybean Transcription Factor Genes Uncovers a Role for SPEECHLESS in Initiating Stomatal Cell Lineages during Embryo Development. Danzer J, Mellott E, Bui AQ, Le BH, Martin P, Hashimoto M, Perez-Lesher J, Chen M, Pelletier JM, Somers DA, Goldberg RB, Harada JJ. , Europe PMC 25963149
Exp. designProtocolsVariablesProcessedSeq. reads
Investigation descriptionE-GEOD-46096.idf.txt
Sample and data relationshipE-GEOD-46096.sdrf.txt
Processed data (1)E-GEOD-46096.processed.1.zip