E-GEOD-4600 - Transcription profiling by array of human SH-SY5Y cells transfected with an MeCP2 transcriptional repressor

Released on 26 October 2007, last updated on 30 April 2015
Homo sapiens
Samples (12)
Array (1)
Protocols (5)
Rett syndrome (RTT) is an X-linked dominant neurodevelopmental disorder caused by mutations in MECP2, encoding methyl-CpG-binding protein 2. MeCP2 is a transcriptional repressor elevated in mature neurons and is predicted to be required for neuronal maturation by regulating multiple target genes. Identifying primary gene targets in either Mecp2-deficient mice or human RTT brain has proven to be difficult, perhaps because of the transient requirement for MeCP2 during neuronal maturation. In order to experimentally control the timing of MeCP2 expression and deficiency during neuronal maturation, human SH-SY5Y cells undergoing mature neuronal differentiation were transfected with methylated MeCP2 oligonucleotide decoy to disrupt the binding of MeCP2 to endogenous targets. Genome-wide expression microarray analysis identified all four known members of the inhibitors of differentiation or inhibitors of DNA-binding (ID1, ID2, ID3 and ID4) subfamily of helix-loop-helix genes as novel neuronal targets of MeCP2. Chromatin immunoprecipitation analysis confirmed binding of MeCP2 near or within the promoters of ID1, ID2 and ID3, and quantitative RT-PCR confirmed increased expression of all four Id genes in Mecp2-deficient mouse brain. All four ID proteins were significantly increased in Mecp2-deficient mouse and human RTT brain using immunofluorescence and laser scanning cytometric analyses. Because of their involvement in cell differentiation and neural development, ID genes are ideal primary targets for MeCP2 regulation of neuronal maturation that may explain the molecular pathogenesis of RTT.
Experiment types
transcription profiling by array, cell type comparison, co-expression, compound treatment, in vitro
Investigation descriptionE-GEOD-4600.idf.txt
Sample and data relationshipE-GEOD-4600.sdrf.txt
Raw data (1)E-GEOD-4600.raw.1.zip
Processed data (1)E-GEOD-4600.processed.1.zip
Array designA-AFFY-44.adf.txt