E-GEOD-45681 - Microarray analysis of WT and Notch2-deficient classical DC subsets

Released on 1 June 2013, last updated on 17 June 2013
Mus musculus
Samples (12)
Array (1)
Protocols (7)
Defense against attaching and effacing (A/E) bacteria requires the sequential generation of IL-23 and IL-22 to induce protective mucosal responses. While the critical source of IL-22 has been identified as CD4+ and Nkp46+ innate lymphoid cells (ILCs), the precise source of IL-23 is unclear. Here, we use genetic techniques to deplete specific classical dendritic cell (cDC) subsets and analyze immunity to the A/E pathogen Citrobacter rodentium. We find that Zbtb46+ cDCs, and specifically Notch2-dependent intestinal CD11b+ cDCs, but not Batf3-dependent CD103+ cDCs, are required for IL-23 production and immunity against C. rodentium. Notch2 controls cDC differentiation at a terminal step mediated by lymphotoxin signaling. Importantly, these results provide the first demonstration of a non-redundant function of CD11b+ cDCs in vivo. Analysis of Notch2-dependent genes in CD11b+ and DEC205+ splenic classical DC subsets. Splenocytes were harvested from littermate WT Notch2 f/f C57Bl/6 or Notch2 CD11c-cre C57Bl/6 mice and DC subsets sorted to >95% purity on the FACSAriaII.
Experiment type
transcription profiling by array 
Ansuman Satpathy, Kenneth Murphy
Investigation descriptionE-GEOD-45681.idf.txt
Sample and data relationshipE-GEOD-45681.sdrf.txt
Raw data (1)E-GEOD-45681.raw.1.zip
Processed data (1)E-GEOD-45681.processed.1.zip
Array designA-AFFY-130.adf.txt