E-GEOD-45178 - Methylome of Salmonella enterica subsp. Enterica serovar Javiana str. CFSAN001992 by PacBio SMRT Sequencing

Status
Released on 15 March 2013, last updated on 2 June 2014
Organism
Salmonella enterica subsp. enterica serovar Javiana str. CFSAN001992
Samples (1)
Protocols (2)
Description
Single-molecule read technologies allow for detection of epigenomic base modifications during routine sequencing by analysis of kinetic data during the reaction, including the duration between base incorporations at the elongation site (the "inter-pulse duration.") Methylome data associated with a closed de novo bacterial genome of Salmonella enterica subsp. enterica serovar Javiana str. CFSAN001992 was produced and submitted to the Gene Expression Omnibus. Single-sample sequencing and base modification detection of cultured isolate of a foodborne pathogen.
Experiment type
methylation profiling by high throughput sequencing 
Contacts
Justin St. Giles Payne <Justin.Payne@fda.hhs.gov>, Justin Payne, Marc Allard, Tim Muruvanda
MINSEQE
Exp. designProtocolsVariablesProcessedSeq. reads
Files
Investigation descriptionE-GEOD-45178.idf.txt
Sample and data relationshipE-GEOD-45178.sdrf.txt
Processed data (2)E-GEOD-45178.processed.1.zip, E-GEOD-45178.processed.2.zip
Links