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E-GEOD-44637 - CTCF binding in B cells and Plasmablasts

Status
Released on 5 February 2014, last updated on 27 February 2014
Organism
Mus musculus
Samples (4)
Protocols (2)
Description
The mammalian CCCTC-binding factor (CTCF) regulates gene expression through the formation of higher order chromatin structures. Recent evidence has implicated a role for CTCF in regulating gene expression in the human MHCII locus. To investigate the role of CTCF in murine MHCII gene expression we mapped CTCF binding sites in B cells (MHCII+ cells) and Plasmablasts which are differentiated B cells that have silenced MHCII gene expression. These observations lead to the identification of differential CTCF binding during differentiation in these cell types and suggest mechanims of MHCII gene regulation. Comparison of CTCF binding in B cells and Plasmablasts in mice using ChIP-seq
Experiment type
ChIP-seq 
Contacts
MINSEQE
Exp. designProtocolsVariablesProcessedSeq. reads
Files
Investigation descriptionE-GEOD-44637.idf.txt
Sample and data relationshipE-GEOD-44637.sdrf.txt
Processed data (2)E-GEOD-44637.processed.1.zip, E-GEOD-44637.processed.2.zip
Links