Please note that we have stopped the regular imports of Gene Expression Omnibus (GEO) data into ArrayExpress. This may not be the latest version of this experiment.

E-GEOD-44265 - HIV-1 Tat protein promotes neuronal dysfunction through disruption of microRNAs

Status
Released on 12 February 2013, last updated on 4 May 2014
Organism
Homo sapiens
Samples (26)
Arrays (4)
Protocols (32)
Description
Over the last decade, small noncoding RNA molecules such as microRNAs (miRNAs) have emerged as critical regulators in the expression and function of eukaryotic genomes. It has been suggested that viral infections and neurological disease outcome may also be shaped by the influence of small RNAs. This has prompted us to suggest that HIV infection alters the endogenous miRNA expression patterns, thereby contributing to neuronal deregulation and AIDS dementia. Therefore, using primary cultures and neuronal cell lines, we examined the impact of a viral protein (HIV-1 Tat) on the expression of miRNAs due to its characteristic features such as release from the infected cells and taken up by noninfected cells. Using microRNA array assay, we demonstrated that Tat deregulates the levels of several miRNAs. Interestingly, miR-34a was among the most highly induced miRNAs in Tat-treated neurons. Tat also decreases the levels of miR-34a target genes such as CREB protein as shown by real time PCR. The effect of Tat was neutralized in the presence of anti-miR-34a. Using in situ hybridization assay, we found that the levels of miR-34a increase in Tat transgenic mice when compared with the parental mice. Therefore, we conclude that deregulation of neuronal functions by HIV-1 Tat protein is miRNA-dependent. Using primary cultures and neuronal cell lines, we examined the impact of a viral protein (HIV-1 Tat) on the expression of miRNAs and mRNAs.
Experiment type
transcription profiling by array 
Contacts
Bassel E Sawaya <sawaya@temple.edu>, A Bagashev, B E Sawaya, B J Hawkins, J J He, J R Chang, L Del Valle, R Mukerjee, T Chabrashvili
Citation
HIV-1 Tat protein promotes neuronal dysfunction through disruption of microRNAs. Chang JR, Mukerjee R, Bagashev A, Del Valle L, Chabrashvili T, Hawkins BJ, He JJ, Sawaya BE. , PMID:21956116
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Links