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E-GEOD-43983 - Genome-wide analysis reveals CLF-regulated transcripts in Arabidopsis

Status
Released on 1 February 2015, last updated on 7 February 2015
Organism
Arabidopsis thaliana
Samples (8)
Protocols (3)
Description
CURLY LEAF (CLF), the major histone methyltransferase of Polycomb Repressive Complex 2 (PRC2), modifies trimethylation of histone H3 lysine 27 (H3K27me3) and mediates dynamical chromatin repression in Arabidopsis. Here we profiled Arabidopsis transcriptomes obtained from roots, leaves, flowers and siliques of Col-0 (As described under GEO ID: GSE38612) and clf-28 plants using RNA-seq. Our analysis uncovered 3835 transcription units were up-regulated in clf-28. Compared with ChIP-CHIP data, we found at least 42% of them were associated with H3K27me3. Transcriptom profiling in roots, leaves, flowers and siliques of clf-28 plants.
Experiment type
RNA-seq of coding RNA 
Contacts
Jun Liu <geo@ncbi.nlm.nih.gov>, Huan Wang, Jian Ye, Nam-Hai Chua, Shulin Deng
MINSEQE
Exp. designProtocolsVariablesProcessedSeq. reads
Files
Investigation descriptionE-GEOD-43983.idf.txt
Sample and data relationshipE-GEOD-43983.sdrf.txt
Additional data (1)E-GEOD-43983.additional.1.zip
Links