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E-GEOD-43616 - Time-course transcriptome of wild-type Arabidopsis leaf

Status
Released on 16 March 2016, last updated on 19 March 2016
Organism
Arabidopsis thaliana
Samples (42)
Protocols (2)
Description
During the senescence stage, leaves undergo degeneration and relocate nutrients accumulated during the growth stage to sink parts such as seeds, critically contributing to plants’ productivity and fitness. Here, we asked how leaf transcriptome is regulated during the senescence stage by performing directional sequencing of total and small RNAs for the entire lifespan of Arabidopsis leaves. The total RNA and small RNA profiles of the Arabidopsis leaf along lifespan (14 and 7 time points, respectively) were generated by next-generation sequencing using Illumina Hiseq2000. Two independent biological replicates were used for each experiment.
Experiment types
RNA-seq of coding RNA, RNA-seq of non coding RNA 
Contacts
Hee Jung Koo <hooferlm@postech.ac.kr>, Daehee Hwang, Hee Koo, Hong Nam, Hye Woo, Hyobin Jeong, Jeongsik Kim, Pyung Lim
MINSEQE
Exp. designProtocolsVariablesProcessedSeq. reads
Files
Investigation descriptionE-GEOD-43616.idf.txt
Sample and data relationshipE-GEOD-43616.sdrf.txt
Additional data (1)E-GEOD-43616.additional.1.zip
Links