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E-GEOD-42783 - Gene expression in three stages of ripening tomato fruit

Status
Released on 5 April 2013, last updated on 22 April 2013
Organism
Solanum lycopersicum
Samples (9)
Array (1)
Protocols (7)
Description
Gene expression in three stages of ripening tomato fruit (variety Ailsa Craig) was determined with the EUTOM3 Affymetrix array in order to compare with degradrome sequencing data from study GSE42661, treated as RNAseq. three replicates of each stage (MG, mature green; T, turning/breaker; RR, red ripe) were hybridized; Expression values were normalized for each sample and reported by iTAG2.3 cDNA identifier in the accompanying matrix table.
Experiment type
transcription profiling by array 
Contacts
Arnaud G Bovy, Ruud A de Maagd
Citation
Identification of microRNA targets in tomato fruit development using high-throughput sequencing and degradome analysis. Karlova R, van Haarst JC, Maliepaard C, van de Geest H, Bovy AG, Lammers M, Angenent GC, de Maagd RA. , PMID:23487304
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-GEOD-42783.idf.txt
Sample and data relationshipE-GEOD-42783.sdrf.txt
Raw data (1)E-GEOD-42783.raw.1.zip
Processed data (1)E-GEOD-42783.processed.1.zip
Array designA-GEOD-16358.adf.txt
Links