E-GEOD-41884 - Expression data from Arabidopsis thaliana seedlings with altered enzymes activity of the tetrapyrrole biosynthesis pathway

Status
Released on 1 April 2013, last updated on 4 December 2015
Organism
Arabidopsis thaliana
Samples (12)
Array (1)
Protocols (8)
Description
The CHLD and CHLM genes encode proteins involved in tetrapyrrole biosynthesis pathway. It was proposed that intermediates like magnesium protoporphyrin might play a role in retrograde plastid-to-nucleus signaling. In the present work we provide evidence that altered enzymes activity of the tetrapyrrole biosynthesis pathway are causing changes in gene expression of over 200 nuclear genes. The expression of the CHLD gene was diminished after inducing the RNAi system by spraying dexamethasone. The expression of the CHLM gene was increased after inducing the overexpressor system by spraying ß-estradiol.
Experiment type
transcription profiling by array 
Contacts
Citation
Meta-analysis of retrograde signaling in Arabidopsis thaliana reveals a core module of genes embedded in complex cellular signaling networks. Gläßer C, Haberer G, Finkemeier I, Pfannschmidt T, Kleine T, Leister D, Dietz KJ, Häusler RE, Grimm B, Mayer KF. , Europe PMC 24719466
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-GEOD-41884.idf.txt
Sample and data relationshipE-GEOD-41884.sdrf.txt
Raw data (1)E-GEOD-41884.raw.1.zip
Processed data (1)E-GEOD-41884.processed.1.zip
Array designA-AFFY-2.adf.txt
Links