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E-GEOD-41798 - Transcriptome study of rice early response to rice blast fungus

Status
Released on 25 December 2012, last updated on 7 January 2013
Organism
Oryza sativa Japonica Group
Samples (18)
Array (1)
Protocols (8)
Description
Rice blast disease is a major threat to rice production worldwide, but the mechanisms underlying rice resistance to the causal agent Magnaporthe oryzae remain elusive. In this whole-genome transcriptome study of rice early defense response to M. oryzae, we applied Affymetrix Rice Genome Genechip to compare the compatible and incompatible rice-M. oryzae interactions in 24 hours post-inoculation. Leaf samples were harvested from three biological replicates of fungal- and mock-inoculated seedlings at 24 hours post-inoculation, from which RNA were extracted and analyzed with Genechip Rice Genome Array.
Experiment type
transcription profiling by array 
Contacts
Tong Wei <nicholwei@pku.edu.cn>, Chengyun Li, Genji Qin, Li-Jia Qu
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-GEOD-41798.idf.txt
Sample and data relationshipE-GEOD-41798.sdrf.txt
Raw data (1)E-GEOD-41798.raw.1.zip
Processed data (1)E-GEOD-41798.processed.1.zip
Array designA-AFFY-126.adf.txt
Links