E-GEOD-41594 - Comprehensive gene expression profile of mouse extrahepatic bileducts and gallbladder during a mouse model of biliary atresia

Status
Released on 15 October 2013, last updated on 22 October 2013
Organism
Mus musculus
Samples (18)
Array (1)
Protocols (7)
Description
Newborn Balb/c mice were injected with 1.5x10^6 fluorescent-forming units (ffu) of Rhesus rotavirus type-A or 0.9% NaCl (normal saline) intraperitoneally within 24 hours of birth to induce experimental model of biliary atresia. The extrahepatic bile ducts including gallbladder were microdissected en bloc at 3, 7 and 14 days after rhesus rotavirus or saline injection. GeneChip® Mouse Gene 1.0 ST Array (Affymetrix, CA) were used to screen mRNAs whose expression was differently regulated after rhusus rotavirus injection compare to the normal saline controls. Gene expression profiling. Each experimental conditon has 3 sets of samples . Two to six extrahepatic bileducts were pooled prior to isolating total RNA depending on the size to ensure adequate RNA quantities to perform experiments quantifying mRNA expression.
Experiment type
transcription profiling by array 
Contacts
Anil G Jegga, Eric Dilbone, Jorge A Bezerra, Kazuhiko Bessho, Kumar Shanmukhappa, Pranavkumar Shivakumar, Rachel Sheridan, Reena Mourya, Stephanie Walters, Vivek Kaimal
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-GEOD-41594.idf.txt
Sample and data relationshipE-GEOD-41594.sdrf.txt
Raw data (1)E-GEOD-41594.raw.1.zip
Processed data (1)E-GEOD-41594.processed.1.zip
Array designA-AFFY-130.adf.txt
Links