E-GEOD-41061 - Methylation Changes in Soybean Mid-Maturation Seed Parts

Released on 26 August 2013, last updated on 3 May 2014
Glycine max
Samples (3)
Protocols (3)
Seeds are comprised of three majors parts of distinct parental origin: the seed coat, embryo, and endosperm. The maternally-derived seed coat is important for nurturing and protecting the seeds during development. By contrast, the embryo and the endosperm are derived from a double fertilization event, where one sperm fertilizes the egg to form the diploid zygote and the other sperm fertilizes the central cell to form the triploid endosperm. Each seed parts undergo distinct developmental programs during seed development. What methylation changes occurring in the different seed parts, if any, remains unknown. To uncover the possible role of DNA methylation in different parts of the seed, we characterized the methylome of three major parts of an early maturation stage seed: seed coat, embryonic cotyledons, and embryonic axis using Illumina sequencing. Illumina sequencing of bisulfite-converted genomic DNA from three parts of an mid-maturation (B1) stage seed: seed coat (B1-SC), embryonic cotyledons (B1-COT), and embryonic axis (B1-AX).
Experiment type
methylation profiling by high throughput sequencing 
Bob Goldberg <bobglab@mcdb.ucla.edu>, Brandon H Le, Jer-Young Lin, Min Chen, Robert B Goldberg
Exp. designProtocolsVariablesProcessedSeq. reads