E-GEOD-41025 - eQTL linkages in wine yeasts to decipher regulatory networks in wine fermentation

Status
Released on 21 October 2013, last updated on 2 June 2014
Organism
Saccharomyces cerevisiae
Samples (56)
Array (1)
Protocols (7)
Description
We performed here the transcriptomic profile of 44 segregants from a cross between S288c and 59A (a spore of EC1118 strain). The analysis was performed in wine fermentation condition in stationary phase during nitrogen starvation and in alcoholic stress. These data, associated with an individual genotyping by Affymetrix array allow us to highlight genetic variations involved in perturbation of regulatory network and fermentative behavior. 56 transcriptomic profiles were performed with Agilent mono-color array. 6 hybridizations were performed for each parental strains: 3 technical replicates for 2 biological replicated samples (59As1 and 59As5; S288Cs1 and S288Cs5). One hybridization was performed for each of the 44 segregants. Using mono-color array, the logarithm base 2 of intensity was directly used after normalization.
Experiment type
transcription profiling by array 
Contacts
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-GEOD-41025.idf.txt
Sample and data relationshipE-GEOD-41025.sdrf.txt
Raw data (1)E-GEOD-41025.raw.1.zip
Processed data (1)E-GEOD-41025.processed.1.zip
Array designA-GEOD-16012.adf.txt
Links