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E-GEOD-40248 - Expression data from control and heat shocked mouse spermatocytes and hepatocytes

Status
Released on 22 August 2012, last updated on 26 September 2012
Organism
Mus musculus
Samples (15)
Array (1)
Protocols (12)
Description
In somatic cells elevated temperature induces activation of the heat shock transcription factor 1 (HSF1) what leads to heat shock proteins synthesis and cytoprotection. However, in the male germ cells (spermatocytes) upon HSF1 activation, caspase-3 dependent apoptosis is induced and spermatogenic cells are actively eliminated. To elucidate a mechanism of such diverse HSF1 activity we carried out genome-wide transcriptional analysis in control and heat-shocked cells, either spermatogenic or somatic. As model somatic cells we used hepatocytes that respond to hyperthermia in a classical way by induction of heat shock genes transcription. As spermatogenic cells we used a fraction of cells enriched with spermatocytes, which are the most sensitive to damage in elevated temperatures. Using isolated spermatocytes we avoided the influence of the somatic testicular component on the our final results. Genes that are differently regulated during hyperthermia in both types of cells have been identified. On Affymetrix gene chip arrays we analyzed RNA isolated from spermatocytes or hepatocytes, either untreated (control) or after heat shock and 2h of recovery at physiological temperature. Analyses were done in triplicate.
Experiment type
transcription profiling by array 
Contacts
Joanna Polanska, Magdalena Olbryt, Malgorzata Kus-Liskiewicz, Wieslawa Widlak
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-GEOD-40248.idf.txt
Sample and data relationshipE-GEOD-40248.sdrf.txt
Raw data (1)E-GEOD-40248.raw.1.zip
Processed data (1)E-GEOD-40248.processed.1.zip
Array designA-GEOD-15967.adf.txt
R ExpressionSetE-GEOD-40248.eSet.r
Links