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E-GEOD-39568 - High-resolution genome-wide transcriptomics analysis of O. dioica development

Status
Released on 23 July 2012, last updated on 3 May 2014
Organism
Oikopleura dioica
Samples (18)
Array (1)
Protocols (6)
Description
The developmental transcriptomics of every significant developmental stage of O. dioica at ultra-high resolution. 18 samples were included, each in technical triplicate (and one with 4 replicates). These samples included 12 developmental time-point providing high-resolution interrogation of the complete animal life cycle. A further 3 samples specifically interrogated adult ovary, testis and somatic tissues. Finally, 3 samples were included that covered animal transcriptomics response under restrictive conditions that induce developmental growth arrest.
Experiment type
transcription profiling by tiling array 
Contacts
Eric Thompson <Eric.Thompson@bio.uib.no>, Bolei Fu, Boris Lenhard, Coen Campsteijn, Daniel Chourrout, Gemma Danks, Harsha Doddapaneni, J R Manak, Mrutyunjaya Parida, Patrick Wincker, Raghu Metpall, Raul Petrin, Stephen Butcher
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-GEOD-39568.idf.txt
Sample and data relationshipE-GEOD-39568.sdrf.txt
Raw data (19)Click to browse raw data
Processed data (2)E-GEOD-39568.processed.1.zip, E-GEOD-39568.processed.2.zip
Array designA-GEOD-15837.adf.txt
Links