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E-GEOD-39422 - Induced Cdx2 binding in progenitor motor neurons and its effect on H3K27me3 chromatin domains [Affymetrix]

Status
Released on 4 July 2013, last updated on 2 June 2014
Organism
Mus musculus
Samples (9)
Array (1)
Protocols (7)
Description
We aim to understand the role that Cdx2 plays in specifying the rostro-caudal identity of differentiating motor neurons. We find that expressing Cdx2 in combination with FGF signaling is sufficient to produce motor neurons with a more caudal identity. ChIP-seq analysis of Cdx2 finds that it binds extensively throughout the Hox regions in progenitor motor neurons. Analysis of polycomb-associated chromatin over Hox regions in the subsequently generated motor neurons finds that Cdx2 binding corresponds to chromatin domains encompassing de-repressed caudal Hox genes. These results suggest a direct role for Cdx2 in specifying caudal motor neuron identity. Expression studies: Affymetrix arrays are used to profile gene expression in ES cells, RA/Hh-derived Day 5 motor neurons, and RA/Hh-derived motor neurons that have also been exposed to Dox (to activate iCdx2) and FGF.
Experiment type
transcription profiling by array 
Contacts
Shaun Mahony <mahony@psu.edu>, Carolyn A Morrison, David K Gifford, Esteban O Mazzoni, Hynek Wichterle
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-GEOD-39422.idf.txt
Sample and data relationshipE-GEOD-39422.sdrf.txt
Raw data (1)E-GEOD-39422.raw.1.zip
Processed data (1)E-GEOD-39422.processed.1.zip
Array designA-AFFY-45.adf.txt
Links