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E-GEOD-3885 - Transcriptome analysis of Arabidopsis colonized by a plant-growth promoting rhizobacterium

Status
Submitted on 20 December 2005, released on 20 December 2005, last updated on 18 October 2011
Organism
Arabidopsis thaliana
Samples (16)
Array (1)
Protocols (2)
Description
Transcriptome analysis of Arabidopsis colonized by a plant-growth promoting rhizobacterium reveals a general effect on disease resistance RNA transcript levels of Arabidopsis plants, infected by the rhizobacterium Pseudomonas thivervalensis (strain MLG45), and axenic control plants were compared using cDNA microarrays representing approximately 14 300 genes. The analysis revealed an increase of defence-related transcripts in the shoots of bacterized plants relative to control (axenic) plants. These modifications of transcript levels were confirmed by physiological experiments. Plants infected with P. thivervalensis were more resistant to subsequent infections by the virulent pathogen P. syringae pv. tomato (strain DC3000) than control plants. In addition, photosynthesis rates were repressed consistently with the reduced growth of plants colonized by P. thivervalensis. These results highlight the value of molecular phenotyping to predict physiological changes. Set of arrays that are part of repeated experiments Biological Replicate Computed
Experiment type
unknown experiment type 
Contacts
Citation
Transcriptome analysis of Arabidopsis colonized by a plant-growth promoting rhizobacterium reveals a general effect on disease resistance. Cartieaux F, Thibaud MC, Zimmerli L, Lessard P, Sarrobert C, David P, Gerbaud A, Robaglia C, Somerville S, Nussaume L.
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-GEOD-3885.idf.txt
Sample and data relationshipE-GEOD-3885.sdrf.txt
Processed data (1)E-GEOD-3885.processed.1.zip
Array designA-GEOD-2786.adf.txt
Links