E-GEOD-38265 - mRNA expression in iPS cells generated by a synthetic self-replicative RNA

Released on 25 April 2014, last updated on 1 June 2014
Homo sapiens
Samples (6)
Protocols (8)
We generated iPS cells with a synthetic self-replicative RNA that expresses four independent reprogramming factors (OCT4, KLF4, SOX2 and either c-MYC or GLIS1). We performed whole genome RNA sequencing (RNA-seq) of iPS cell clones, parental BJ and HUES9 ES cell controls. All iPS cell clones analyzed by RNA-seq showed unsupervised hierarchical clustering and expression signatures characteristic of human HUES9 ES cells that were highly divergent from parental human fibroblasts. RNA-seq in two OKS-iM iPS clones (generated from OCT4, KLF4, SOX2 and cMYC expressing RNA replicon), two OKS-iG clones (generated from OCT4, KLF4, SOX2 and GLIS1 expressing RNA replicon), HUES9 and BJ cells.
Experiment type
RNA-seq of coding RNA 
Hai-Ri Li <hairili@ucsd.edu>, Hairi Li, Naohisha Yoshioka, Steve Dowdy, Xiang-Dong Fu
Efficient generation of human iPSCs by a synthetic self-replicative RNA. Yoshioka N, Gros E, Li HR, Kumar S, Deacon DC, Maron C, Muotri AR, Chi NC, Fu XD, Yu BD, Dowdy SF. , Europe PMC 23910086
Exp. designProtocolsVariablesProcessedSeq. reads
Investigation descriptionE-GEOD-38265.idf.txt
Sample and data relationshipE-GEOD-38265.sdrf.txt
Processed data (2)E-GEOD-38265.processed.1.zip, E-GEOD-38265.processed.2.zip
Additional data (1)E-GEOD-38265.additional.1.zip