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E-GEOD-37893 - Methylation Changes in Soybean Early Maturation Seed Compartments Using LCM

Status
Released on 11 May 2012, last updated on 3 May 2014
Organism
Glycine max
Samples (2)
Protocols (3)
Description
What methylation changes are occurring in different compartments of early maturation stage seed largely remains unknown. To uncover the possible role of DNA methylation in different compartments of early maturation stage seed, we characterized the methylome of two major compartments in embryonic cotyledon: cotyledon abaxial parenchyma (EM-COT-ABPY) and cotyledon adaxial parenchyma (EM-COT-ADPY) using Illumina sequencing. Illumina sequencing of bisulfite-converted genomic DNA from cotyledon abaxial parenchyma (EM-COT-ABPY) and cotyledon adaxial parenchyma (EM-COT-ADPY) compartments.
Experiment type
methylation profiling by high throughput sequencing 
Contacts
Brandon Le <ble@ucla.edu>, Brandon H Le, Jer-Young Lin, Jungim Hur, Min Chen, Robert B Goldberg
MINSEQE
Exp. designProtocolsVariablesProcessedSeq. reads
Files
Investigation descriptionE-GEOD-37893.idf.txt
Sample and data relationshipE-GEOD-37893.sdrf.txt
Processed data (2)E-GEOD-37893.processed.1.zip, E-GEOD-37893.processed.2.zip
Additional data (1)E-GEOD-37893.additional.1.zip
Links