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E-GEOD-37391 - Transcriptome analysis of Thermotoga maritima under multiple growth conditions [tiling array]

Status
Released on 2 August 2013, last updated on 2 June 2014
Organism
Thermotoga maritima MSB8
Samples (14)
Array (1)
Protocols (7)
Description
Investigation of transcripts (boundary, level, etc.) across the entire T. maritima genome in mulitple growth conditions, including logphase, late exponential, heat shock and hydrogen inhibited conditions. The new genome annotation has been approved by Genbank [CP004077, pending release of the manuscript]. A fourteen array expression profiling study was performed using total RNA from four distinct growth conditions collected under maltose minimal media.
Experiment type
transcription profiling by tiling array 
Contacts
Haythem Latif <geo@ncbi.nlm.nih.gov>, Alexandra C Schrimpe-Rutledge, Bernhard O Palsson, Dae-Hee Lee, Harish Nagarajan, Joshua A Lerman, Joshua N Adkins, Karsten Zengler, Richard D Smith, Vasiliy A Portnoy, Yekaterina Tarasova, Yu Qiu
Citation
The genome organization of Thermotoga maritima reflects its lifestyle. Latif H, Lerman JA, Portnoy VA, Tarasova Y, Nagarajan H, Schrimpe-Rutledge AC, Smith RD, Adkins JN, Lee DH, Qiu Y, Zengler K. , PMID:23637642
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-GEOD-37391.idf.txt
Sample and data relationshipE-GEOD-37391.sdrf.txt
Raw data (1)E-GEOD-37391.raw.1.zip
Processed data (1)E-GEOD-37391.processed.1.zip
Array designA-GEOD-15460.adf.txt
Links